A branch-and-cut algorithm for multiple sequence alignment - download pdf or read online

By Althaus E.

Show description

Read Online or Download A branch-and-cut algorithm for multiple sequence alignment PDF

Best algorithms and data structures books

Practical Rf System Design - download pdf or read online

The last word useful source for modern day RF process layout professionalsRadio frequency elements and circuits shape the spine of ultra-modern cellular and satellite tv for pc communications networks. hence, either practising and aspiring execs must be in a position to remedy ever extra complicated difficulties of RF layout.

Get A VU-algorithm for convex minimization PDF

For convex minimization we introduce an set of rules in accordance with VU-space decomposition. the tactic makes use of a package subroutine to generate a series of approximate proximal issues. whilst a primal-dual tune resulting in an answer and nil subgradient pair exists, those issues approximate the primal tune issues and provides the algorithm's V, or corrector, steps.

Handbook of Aqueous Solubility Data, Second Edition by Samuel H. Yalkowsky PDF

Through the years, researchers have mentioned solubility information within the chemical, pharmaceutical, engineering, and environmental literature for a number of thousand natural compounds. till the 1st booklet of the guide of Aqueous Solubility information, this knowledge were scattered all through quite a few resources.

Download e-book for iPad: The Little Data Book on Information and Communication by World Bank

This Little information ebook provides at-a-glance tables for over one hundred forty economies exhibiting the latest nationwide information on key signs of data and communications know-how (ICT), together with entry, caliber, affordability, efficiency,sustainability, and functions.

Additional info for A branch-and-cut algorithm for multiple sequence alignment

Example text

In almost all cases, either the optimal LP solution was integer, or the time limit was exceeded during the solution of the LP at the root node. Note that the time limit was not checked during calls to the LP solver, so the overall running time could exceed the 10 hours time limit. 6 out of 7 minutes for instance 1hpi. For all the instances, separation took less than 10 seconds for each iteration, whereas the time to solve the LPs heavily depended on the number of variables that remained in the LP after preprocessing.

Biol. 302, 205–217 (2000) 23. : A Polyhedral Approach to Sequence Alignment Problems. PhD thesis, Universit¨at des Saarlandes, 1999 24. : A branch-and-cut algorithm for multiple sequence alignment. In: Proceedings of the First Annual International Conference on Computational Molecular Biology (RECOMB-97), 1997, pp 241–249 25. K. Reinert, J. Stoye, and T. Will. An iterative methods for faster sum-of-pairs multiple sequence alignment. BIOINFORMATICS 16(9):808–814, 2000. 26. SCIL–Symbolic Constraints for Integer Linear programming, 2002.

This work was partially supported by a fellowship within the ICSI Postdoc Program of the German Academic Exchange Service (DAAD), and by the German Federal Ministry of Education and Research, grant no. 0312705A “Berlin Center for Genome Based Bioinformatics”. Moreover, part of this work was done while the second author was visiting the Max Planck Institut f¨ur Informatik in Saarbr¨ucken. References 1. : SCIP - a framework to integrate constraint and mixed integer programming. Technical Report 04-19, Zuse Institute Berlin, 2004.

Download PDF sample

A branch-and-cut algorithm for multiple sequence alignment by Althaus E.


by Brian
4.3

Rated 4.27 of 5 – based on 38 votes